Public Member Functions | Static Public Member Functions | Friends | List of all members
MichaelisMentenReactionRate Class Reference

Michaelis-Menten reaction rate for enzymatic reactions. More...

Public Member Functions

 MichaelisMentenReactionRate (const speciesTable &species, const dictionary &dict)
 Construct from dictionary. More...
 
void preEvaluate () const
 Pre-evaluation hook. More...
 
void postEvaluate () const
 Post-evaluation hook. More...
 
scalar operator() (const scalar p, const scalar T, const scalarField &c, const label li) const
 
scalar ddT (const scalar p, const scalar T, const scalarField &c, const label li) const
 
const List< Tuple2< label, scalar > > & beta () const
 Third-body efficiencies (beta = 1-alpha) More...
 
void dcidc (const scalar p, const scalar T, const scalarField &c, const label li, scalarField &dcidc) const
 Species concentration derivative of the pressure dependent term. More...
 
scalar dcidT (const scalar p, const scalar T, const scalarField &c, const label li) const
 Temperature derivative of the pressure dependent term. More...
 
void write (Ostream &os) const
 Write to stream. More...
 

Static Public Member Functions

static word type ()
 Return the type name. More...
 

Friends

Ostream & operator<< (Ostream &, const MichaelisMentenReactionRate &)
 

Detailed Description

Michaelis-Menten reaction rate for enzymatic reactions.

Reference: 

    Michaelis, L., & Menten, M. L. (1913).
    Die Kinetik der InwertinWirkung.
    Biochem., (49), 333-369.
Source files

Definition at line 62 of file MichaelisMentenReactionRate.H.

Constructor & Destructor Documentation

◆ MichaelisMentenReactionRate()

MichaelisMentenReactionRate ( const speciesTable &  species,
const dictionary &  dict 
)
inline

Construct from dictionary.

Definition at line 29 of file MichaelisMentenReactionRateI.H.

Member Function Documentation

◆ type()

static word type ( )
inlinestatic

Return the type name.

Definition at line 97 of file MichaelisMentenReactionRate.H.

References MichaelisMentenReactionRate::beta(), Foam::constant::universal::c, MichaelisMentenReactionRate::dcidc(), MichaelisMentenReactionRate::dcidT(), MichaelisMentenReactionRate::ddT(), p, MichaelisMentenReactionRate::postEvaluate(), MichaelisMentenReactionRate::preEvaluate(), Foam::T(), and MichaelisMentenReactionRate::write().

Here is the call graph for this function:

◆ preEvaluate()

void preEvaluate ( ) const
inline

Pre-evaluation hook.

Definition at line 45 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::type().

Here is the caller graph for this function:

◆ postEvaluate()

void postEvaluate ( ) const
inline

Post-evaluation hook.

Definition at line 49 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::type().

Here is the caller graph for this function:

◆ operator()()

Foam::scalar operator() ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li 
) const
inline

Definition at line 54 of file MichaelisMentenReactionRateI.H.

References MichaelisMentenReactionRate::ddT().

Here is the call graph for this function:

◆ ddT()

Foam::scalar ddT ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li 
) const
inline

Definition at line 66 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::operator()(), and MichaelisMentenReactionRate::type().

Here is the caller graph for this function:

◆ beta()

const Foam::List< Foam::Tuple2< Foam::label, Foam::scalar > > & beta ( ) const
inline

Third-body efficiencies (beta = 1-alpha)

non-empty only for third-body reactions with enhanced molecularity (alpha != 1)

Definition at line 78 of file MichaelisMentenReactionRateI.H.

References MichaelisMentenReactionRate::dcidc().

Referenced by MichaelisMentenReactionRate::type().

Here is the call graph for this function:
Here is the caller graph for this function:

◆ dcidc()

void dcidc ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li,
scalarField &  dcidc 
) const
inline

Species concentration derivative of the pressure dependent term.

Definition at line 85 of file MichaelisMentenReactionRateI.H.

References MichaelisMentenReactionRate::dcidT().

Referenced by MichaelisMentenReactionRate::beta(), and MichaelisMentenReactionRate::type().

Here is the call graph for this function:
Here is the caller graph for this function:

◆ dcidT()

Foam::scalar dcidT ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li 
) const
inline

Temperature derivative of the pressure dependent term.

Definition at line 98 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::dcidc(), and MichaelisMentenReactionRate::type().

Here is the caller graph for this function:

◆ write()

void write ( Ostream &  os) const
inline

Write to stream.

Definition at line 109 of file MichaelisMentenReactionRateI.H.

References Foam::writeEntry().

Referenced by MichaelisMentenReactionRate::type().

Here is the call graph for this function:
Here is the caller graph for this function:

Friends And Related Function Documentation

◆ operator<<

Ostream& operator<< ( Ostream &  ,
const MichaelisMentenReactionRate &   
)
friend
The documentation for this class was generated from the following files: