Scotch domain decomposition. When run in parallel will collect the whole graph on to the master, decompose and send back. Use ptscotch for proper distributed decomposition. More...

Inheritance diagram for scotch:

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Collaboration diagram for scotch:

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Public Member Functions
	TypeName ("scotch")
	Runtime type information. More...

	scotch (const dictionary &decompositionDict)
	Construct given the decomposition dictionary and mesh. More...

	scotch (const scotch &)=delete
	Disallow default bitwise copy construction. More...

virtual	~scotch ()
	Destructor. More...

virtual labelList	decompose (const polyMesh &mesh, const pointField &points, const scalarField &pointWeights)
	Return for every coordinate the wanted processor number. Use the. More...

virtual labelList	decompose (const polyMesh &mesh, const labelList &agglom, const pointField &regionPoints, const scalarField &regionWeights)
	Return for every coordinate the wanted processor number. Gets. More...

virtual labelList	decompose (const labelListList &globalCellCells, const pointField &cellCentres, const scalarField &cellWeights)
	Return for every coordinate the wanted processor number. Explicitly. More...

void	operator= (const scotch &)=delete
	Disallow default bitwise assignment. More...

virtual labelList	decompose (const pointField &points, const scalarField &pointWeights)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const pointField &)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const polyMesh &mesh, const pointField &points, const scalarField &pointWeights)=0
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const polyMesh &, const pointField &)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const polyMesh &mesh, const labelList &cellToRegion, const pointField &regionPoints, const scalarField &regionWeights)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const polyMesh &mesh, const labelList &cellToRegion, const pointField &regionPoints)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const labelListList &globalCellCells, const pointField &cellCentres, const scalarField &cellWeights)=0
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const labelListList &globalCellCells, const pointField &cellCentres)
	Inherit decompose from decompositionMethod. More...

virtual labelList	decompose (const polyMesh &mesh, const scalarField &cellWeights, const boolList &blockedFace, const PtrList< labelList > &specifiedProcessorFaces, const labelList &specifiedProcessor, const List< labelPair > &explicitConnections)
	Inherit decompose from decompositionMethod. More...

labelList	decompose (const polyMesh &mesh, const scalarField &cellWeights)
	Inherit decompose from decompositionMethod. More...

Public Member Functions inherited from decompositionMethod
	TypeName ("decompositionMethod")
	Runtime type information. More...

	declareRunTimeSelectionTable (autoPtr, decompositionMethod, decomposer,(const dictionary &decompositionDict),(decompositionDict))

	declareRunTimeSelectionTable (autoPtr, decompositionMethod, distributor,(const dictionary &decompositionDict),(decompositionDict))

	decompositionMethod (const dictionary &decompositionDict)
	Construct given the decomposition dictionary. More...

	decompositionMethod (const decompositionMethod &)=delete
	Disallow default bitwise copy construction. More...

virtual	~decompositionMethod ()
	Destructor. More...

label	nDomains () const

virtual labelList	decompose (const pointField &points, const scalarField &pointWeights)
	Return for every coordinate the wanted processor number. More...

virtual labelList	decompose (const pointField &)
	Like decompose but with uniform weights on the points. More...

virtual labelList	decompose (const polyMesh &, const pointField &)
	Like decompose but with uniform weights on the points. More...

virtual labelList	decompose (const polyMesh &mesh, const labelList &cellToRegion, const pointField &regionPoints)
	Like decompose but with uniform weights on the regions. More...

virtual labelList	decompose (const labelListList &globalCellCells, const pointField &cellCentres)
	Like decompose but with uniform weights on the cells. More...

void	setConstraints (const polyMesh &mesh, boolList &blockedFace, PtrList< labelList > &specifiedProcessorFaces, labelList &specifiedProcessor, List< labelPair > &explicitConnections)
	Helper: extract constraints: More...

void	applyConstraints (const polyMesh &mesh, const boolList &blockedFace, const PtrList< labelList > &specifiedProcessorFaces, const labelList &specifiedProcessor, const List< labelPair > &explicitConnections, labelList &finalDecomp)
	Helper: apply constraints to a decomposition. This gives. More...

virtual labelList	decompose (const polyMesh &mesh, const scalarField &cellWeights, const boolList &blockedFace, const PtrList< labelList > &specifiedProcessorFaces, const labelList &specifiedProcessor, const List< labelPair > &explicitConnections)
	Decompose a mesh with constraints. More...

labelList	decompose (const polyMesh &mesh, const scalarField &cellWeights)
	Decompose a mesh. Apply all constraints from decomposeParDict. More...

void	operator= (const decompositionMethod &)=delete
	Disallow default bitwise assignment. More...

Additional Inherited Members
Static Public Member Functions inherited from decompositionMethod
static autoPtr< decompositionMethod >	NewDecomposer (const dictionary &decompositionDict)
	Return a reference to the selected decomposition method. More...

static autoPtr< decompositionMethod >	NewDistributor (const dictionary &decompositionDict)
	Return a reference to the selected decomposition method. More...

static IOdictionary	decomposeParDict (const Time &time)
	Read and return the decomposeParDict. More...

static labelList	scaleWeights (const scalarField &weights, label &nWeights, const bool distributed=true)
	Convert the given scalar weights to labels. More...

static void	calcCellCells (const polyMesh &mesh, const labelList &agglom, const label nLocalCoarse, const bool global, CompactListList< label > &cellCells)
	Helper: determine (local or global) cellCells from mesh. More...

static void	calcCellCells (const polyMesh &mesh, const labelList &agglom, const label nLocalCoarse, const bool parallel, CompactListList< label > &cellCells, CompactListList< scalar > &cellCellWeights)
	Helper: determine (local or global) cellCells and face weights. More...

Protected Member Functions inherited from decompositionMethod
label	nWeights (const pointField &points, const scalarField &pointWeights) const
	Return the number of weights per point. More...

label	checkWeights (const pointField &points, const scalarField &pointWeights) const
	Check the weights against the points. More...

Protected Attributes inherited from decompositionMethod
dictionary	decompositionDict_

label	nProcessors_

PtrList< decompositionConstraint >	constraints_
	Optional constraints. More...

Detailed Description

Scotch domain decomposition. When run in parallel will collect the whole graph on to the master, decompose and send back. Use ptscotch for proper distributed decomposition.

Quoting from the Scotch forum, on the 2008-08-22 10:09, Francois PELLEGRINI posted the following details:

RE: Graph mapping 'strategy' string

Strategy handling in Scotch is a bit tricky. In order
not to be confused, you must have a clear view of how they are built.
Here are some rules:

1- Strategies are made up of "methods" which are combined by means of
"operators".

2- A method is of the form "m{param=value,param=value,...}", where "m"
is a single character (this is your first error: "f" is a method name,
not a parameter name).

3- There exist different sort of strategies : bipartitioning strategies,
mapping strategies, ordering strategies, which cannot be mixed. For
instance, you cannot build a bipartitioning strategy and feed it to a
mapping method (this is your second error).

To use the "mapCompute" routine, you must create a mapping strategy, not
a bipartitioning one, and so use stratGraphMap() and not
stratGraphBipart(). Your mapping strategy should however be based on the
"recursive bipartitioning" method ("b"). For instance, a simple (and
hence not very efficient) mapping strategy can be :

"b{sep=f}"

which computes mappings with the recursive bipartitioning method "b",
this latter using the Fiduccia-Mattheyses method "f" to compute its
separators.

If you want an exact partition (see your previous post), try
"b{sep=fx}".

However, these strategies are not the most efficient, as they do not
make use of the multi-level framework.

To use the multi-level framework, try for instance:

"b{sep=m{vert=100,low=h,asc=f}x}"

The current default mapping strategy in Scotch can be seen by using the
"-vs" option of program gmap. It is, to date:

r
{
    job=t,
    map=t,
    poli=S,
    sep=
    (
        m
        {
            asc=b
            {
                bnd=
                (
                    d{pass=40,dif=1,rem=1}
                 |
                )
                f{move=80,pass=-1,bal=0.002491},
                org=f{move=80,pass=-1,bal=0.002491},
                width=3
            },
            low=h{pass=10}
            f{move=80,pass=-1,bal=0.002491},
            type=h,
            vert=80,
            rat=0.8
        }
      | m
        {
            asc=b
            {
                bnd=
                (
                    d{pass=40,dif=1,rem=1}
                  |
                )
                f{move=80,pass=-1,bal=0.002491},
                org=f{move=80,pass=-1,bal=0.002491},
                width=3
            },
            low=h{pass=10}
            f{move=80,pass=-1,bal=0.002491},
            type=h,
            vert=80,
            rat=0.8
        }
    )
}

Given that this information was written in 2008, this example strategy will unlikely work as-is with the more recent Scotch versions. Therefore, the steps for getting the current default strategy from within Scotch, is to do the following steps:

Edit the file system/decomposeParDict and use the following settings:
```
method          scotch;

scotchCoeffs
{
    writeGraph true;
}
```
Run decomposePar. For example, it will write a file named region0.grf.
Now, instead of using gmap, run gpart with the following command structure to get the default strategy:
```
gpart \<nProcs\> -vs \<grfFile\>
```
where:
- <grfFile> is the file that was obtained with the option writeGraph=true, namely region0.grf.
- <nProcs> is the numberOfSubdomains defined in the dictionary file.
At the end of the execution will be shown a long string, similar to the following example (complete line was cropped at [...]):
```
S    Strat=m{asc=b{width=3,bnd=d{pass=40,dif=1,rem=0}[...],type=h}
```

Edit the file system/decomposeParDict once again and add the strategy entry as exemplified:

method          scotch;

scotchCoeffs
{
    // writeGraph true;
    strategy "m{asc=b{width=3,bnd=d{pass=40,dif=1,rem=0}[...],type=h}";
}

Finally, run decomposePar once again, to at least test if it works as intended.

Note: gpart can be found in the current search path by adding the respective bin folder from the Scotch installation, namely by running the following commands:

        source $(foamEtcFile config.sh/scotch)
        export PATH=$PATH:$SCOTCH_ARCH_PATH/bin

Source files

Definition at line 225 of file scotch.H.

Constructor & Destructor Documentation

◆ scotch() [1/2]

scotch ( const dictionary & decompositionDict )

Construct given the decomposition dictionary and mesh.

Definition at line 94 of file dummyScotch.C.

◆ scotch() [2/2]

scotch ( const scotch & )

delete

Disallow default bitwise copy construction.

◆ ~scotch()

virtual ~scotch ( )

inlinevirtual

Destructor.

Definition at line 270 of file scotch.H.

Member Function Documentation

◆ TypeName()

TypeName ( "scotch" )

Runtime type information.

◆ decompose() [1/13]

Foam::labelList decompose	(	const polyMesh &	mesh,
		const pointField &	points,
		const scalarField &	pointWeights
	)

virtual

Return for every coordinate the wanted processor number. Use the.

mesh connectivity (if needed) Weights get normalised with minimum weight and truncated to convert into integer so e.g. 3.5 is seen as 3. The overall sum of weights might otherwise overflow.

Implements decompositionMethod.

Definition at line 105 of file dummyScotch.C.

References Foam::exit(), Foam::FatalError, FatalErrorInFunction, notImplementedMessage, and List< label >::null().

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◆ decompose() [2/13]

Foam::labelList decompose	(	const polyMesh &	mesh,
		const labelList &	agglom,
		const pointField &	regionPoints,
		const scalarField &	regionWeights
	)

virtual

Return for every coordinate the wanted processor number. Gets.

passed agglomeration map (from fine to coarse cells) and coarse cell location. Can be overridden by decomposers that provide this functionality natively. See note on weights above.

Reimplemented from decompositionMethod.

Definition at line 119 of file dummyScotch.C.

References Foam::exit(), Foam::FatalError, FatalErrorInFunction, notImplementedMessage, and List< label >::null().

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◆ decompose() [3/13]

Foam::labelList decompose	(	const labelListList &	globalCellCells,
		const pointField &	cellCentres,
		const scalarField &	cellWeights
	)

virtual

Return for every coordinate the wanted processor number. Explicitly.

provided mesh connectivity. The connectivity is equal to mesh.cellCells() except for

in parallel the cell numbers are global cell numbers (starting from 0 at processor0 and then incrementing all through the processors)
the connections are across coupled patches See note on weights above.

Implements decompositionMethod.

Definition at line 134 of file dummyScotch.C.

References Foam::exit(), Foam::FatalError, FatalErrorInFunction, notImplementedMessage, and List< label >::null().

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◆ operator=()

void operator= ( const scotch & )

delete

Disallow default bitwise assignment.

◆ decompose() [4/13]

virtual labelList decompose

inline

Inherit decompose from decompositionMethod.

Definition at line 155 of file decompositionMethod.H.

◆ decompose() [5/13]

virtual labelList decompose

inline

Inherit decompose from decompositionMethod.

Definition at line 166 of file decompositionMethod.H.

◆ decompose() [6/13]

virtual labelList decompose

Inherit decompose from decompositionMethod.

◆ decompose() [7/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 185 of file decompositionMethod.C.

◆ decompose() [8/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 193 of file decompositionMethod.C.

◆ decompose() [9/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 202 of file decompositionMethod.C.

◆ decompose() [10/13]

virtual labelList decompose

Inherit decompose from decompositionMethod.

◆ decompose() [11/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 227 of file decompositionMethod.C.

◆ decompose() [12/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 313 of file decompositionMethod.C.

◆ decompose() [13/13]

Foam::labelList decompose

Inherit decompose from decompositionMethod.

Definition at line 331 of file decompositionMethod.C.

The documentation for this class was generated from the following files:

src/parallel/decompose/scotch/scotch.H
src/dummyThirdParty/scotch/dummyScotch.C
src/parallel/decompose/scotch/scotch.C

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ scotch() [1/2]

◆ scotch() [2/2]

◆ ~scotch()

Member Function Documentation

◆ TypeName()

◆ decompose() [1/13]

◆ decompose() [2/13]

◆ decompose() [3/13]

◆ operator=()

◆ decompose() [4/13]

◆ decompose() [5/13]

◆ decompose() [6/13]

◆ decompose() [7/13]

◆ decompose() [8/13]

◆ decompose() [9/13]

◆ decompose() [10/13]

◆ decompose() [11/13]

◆ decompose() [12/13]

◆ decompose() [13/13]