Marching tet iso surface algorithm with optional filtering to keep only points originating from mesh edges. More...
Public Types | |
enum | filterType { none, partial, full } |
Public Types inherited from MeshedSurface< face > | |
typedef face | FaceType |
Face type used. More... | |
Public Types inherited from PrimitivePatch< FaceList, PointField > | |
enum | surfaceTopo { MANIFOLD, OPEN, ILLEGAL } |
Enumeration defining the surface type. Used in check routines. More... | |
typedef FaceList | FaceListType |
typedef std::remove_reference< FaceList >::type::value_type | FaceType |
typedef PointField | PointFieldType |
typedef std::remove_reference< PointField >::type::value_type | PointType |
Public Member Functions | |
TypeName ("isoSurface") | |
Runtime type information. More... | |
isoSurface (const polyMesh &mesh, const scalarField &cellValues, const scalarField &pointValues, const scalar iso, const filterType filter) | |
Construct from dictionary. More... | |
const labelList & | meshCells () const |
For every face original cell in mesh. More... | |
const labelList & | pointToFace () const |
For every point originating face (pyramid) in mesh. More... | |
const edgeList & | pointToVerts () const |
Per point: originating mesh vertex/cc. See encoding above. More... | |
template<class Type > | |
tmp< Field< Type > > | interpolate (const Field< Type > &cCoords, const Field< Type > &pCoords) const |
Interpolates cCoords,pCoords. More... | |
template<class Type > | |
Foam::tmp< Foam::Field< Type > > | interpolate (const Field< Type > &cellCoords, const Field< Type > &pointCoords) const |
Public Member Functions inherited from MeshedSurface< face > | |
MeshedSurface () | |
Construct null. More... | |
MeshedSurface (pointField &&, List< face > &&, surfZoneList &&) | |
Construct by transferring components (points, faces, zones). More... | |
MeshedSurface (pointField &&, List< face > &&, const labelUList &zoneSizes=labelUList(), const UList< word > &zoneNames=UList< word >()) | |
Construct by transferring components (points, faces). More... | |
MeshedSurface (const MeshedSurface &) | |
Copy constructor. More... | |
MeshedSurface (const UnsortedMeshedSurface< face > &) | |
Construct from a UnsortedMeshedSurface. More... | |
MeshedSurface (const polyBoundaryMesh &, const bool globalPoints=false) | |
Construct from a boundary mesh with local points/faces. More... | |
MeshedSurface (const surfMesh &) | |
Construct from a surfMesh. More... | |
MeshedSurface (UnsortedMeshedSurface< face > &&) | |
Construct by transferring the contents from a UnsortedMeshedSurface. More... | |
MeshedSurface (MeshedSurface< face > &&) | |
Construct by transferring the contents from a MeshedSurface. More... | |
MeshedSurface (const fileName &) | |
Construct from file name (uses extension to determine type) More... | |
MeshedSurface (const fileName &, const word &ext) | |
Construct from file name (uses extension to determine type) More... | |
MeshedSurface (const Time &, const word &surfName="") | |
Construct from database. More... | |
MeshedSurface (const MeshedSurface< face > &surf) | |
ClassName ("MeshedSurface") | |
Runtime type information. More... | |
bool | isTri () |
Specialization for holding triangulated information. More... | |
declareRunTimeSelectionTable (autoPtr, MeshedSurface, fileExtension,(const fileName &name),(name)) | |
virtual | ~MeshedSurface () |
Destructor. More... | |
declareMemberFunctionSelectionTable (void, UnsortedMeshedSurface, write, fileExtension,(const fileName &name, const MeshedSurface< face > &surf),(name, surf)) | |
virtual void | write (const fileName &name) const |
Generic write routine. Chooses writer based on extension. More... | |
void | write (const Time &, const word &surfName="") const |
Write to database. More... | |
label | size () const |
The surface size is the number of faces. More... | |
const List< face > & | faces () const |
Return const access to the faces. More... | |
const List< surfZone > & | surfZones () const |
Const access to the surface zones. More... | |
virtual void | addZones (const UList< surfZone > &, const bool cullEmpty=false) |
Add surface zones. More... | |
virtual void | addZones (const labelUList &sizes, const UList< word > &names, const bool cullEmpty=false) |
Add surface zones. More... | |
virtual void | addZones (const labelUList &sizes, const bool cullEmpty=false) |
Add surface zones. More... | |
virtual void | removeZones () |
Remove surface zones. More... | |
virtual void | clear () |
Clear all storage. More... | |
virtual void | movePoints (const pointField &) |
Move points. More... | |
virtual void | scalePoints (const scalar) |
Scale points. A non-positive factor is ignored. More... | |
virtual void | reset (pointField &&points, List< face > &&faces, surfZoneList &&zones) |
Reset primitive data (points, faces and zones) More... | |
virtual void | reset (List< point > &&points, List< face > &&faces, surfZoneList &&zones) |
Reset primitive data (points, faces and zones) More... | |
virtual void | cleanup (const bool verbose) |
Remove invalid faces. More... | |
virtual bool | stitchFaces (const scalar tol=small, const bool verbose=false) |
virtual bool | checkFaces (const bool verbose=false) |
virtual label | triangulate () |
Triangulate in-place, returning the number of triangles added. More... | |
virtual label | triangulate (List< label > &faceMap) |
Triangulate in-place, returning the number of triangles added. More... | |
label | triangulate () |
Specialization for holding triangulated information. More... | |
label | triangulate (List< label > &faceMap) |
Specialization for holding triangulated information. More... | |
MeshedSurface | subsetMesh (const labelHashSet &include, labelList &pointMap, labelList &faceMap) const |
Return new surface. More... | |
MeshedSurface | subsetMesh (const labelHashSet &include) const |
Return new surface. More... | |
void | transfer (MeshedSurface< face > &) |
Transfer the contents of the argument and annul the argument. More... | |
void | transfer (UnsortedMeshedSurface< face > &) |
Transfer the contents of the argument and annul the argument. More... | |
bool | read (const fileName &, const word &ext) |
Read from file. Chooses reader based on explicit extension. More... | |
virtual bool | read (const fileName &) |
Read from file. Chooses reader based on detected extension. More... | |
void | writeStats (Ostream &os) const |
void | operator= (const MeshedSurface< face > &) |
operator MeshedSurfaceProxy< face > () const | |
Conversion operator to MeshedSurfaceProxy. More... | |
Public Member Functions inherited from PrimitivePatch< FaceList, PointField > | |
PrimitivePatch (const FaceList &faces, const Field< PointType > &points) | |
Construct from components. More... | |
PrimitivePatch (FaceList &&faces, Field< PointType > &&points) | |
Move constructor from components. More... | |
PrimitivePatch (FaceList &&faces, List< PointType > &&points) | |
Move constructor from components. More... | |
PrimitivePatch (FaceList &faces, Field< PointType > &points, const bool reuse) | |
Construct from components, reuse storage. More... | |
PrimitivePatch (const PrimitivePatch< FaceList, PointField > &) | |
Copy constructor. More... | |
PrimitivePatch (PrimitivePatch< FaceList, PointField > &&) | |
Move constructor. More... | |
virtual autoPtr< PrimitivePatch< FaceList, PointField > > | clone () const |
Construct and return a clone. More... | |
PrimitivePatch (Istream &, const Field< PointType > &points) | |
Construct from Istream. More... | |
virtual | ~PrimitivePatch () |
Destructor. More... | |
const Field< PointType > & | points () const |
Return reference to global points. More... | |
label | nPoints () const |
Return number of points supporting patch faces. More... | |
label | nEdges () const |
Return number of edges in patch. More... | |
const edgeList & | edges () const |
Return list of edges, address into LOCAL point list. More... | |
label | nInternalEdges () const |
Number of internal edges. More... | |
bool | isInternalEdge (const label edgeI) const |
Is internal edge? More... | |
const labelList & | boundaryPoints () const |
Return list of boundary points,. More... | |
const labelListList & | faceFaces () const |
Return face-face addressing. More... | |
const labelListList & | edgeFaces () const |
Return edge-face addressing. More... | |
const labelListList & | faceEdges () const |
Return face-edge addressing. More... | |
const labelListList & | pointEdges () const |
Return point-edge addressing. More... | |
const labelListList & | pointFaces () const |
Return point-face addressing. More... | |
const List< FaceType > & | localFaces () const |
Return patch faces addressing into local point list. More... | |
const labelList & | meshPoints () const |
Return labelList of mesh points in patch. They are constructed. More... | |
const Map< label > & | meshPointMap () const |
Mesh point map. Given the global point index find its. More... | |
const Field< PointType > & | localPoints () const |
Return pointField of points in patch. More... | |
const labelList & | localPointOrder () const |
Return orders the local points for most efficient search. More... | |
label | whichPoint (const label gp) const |
Given a global point index, return the local point index. More... | |
label | whichEdge (const edge &) const |
Given an edge in local point labels, return its. More... | |
labelList | meshEdges (const edgeList &allEdges, const labelListList &cellEdges, const labelList &faceCells) const |
Return labels of patch edges in the global edge list using. More... | |
labelList | meshEdges (const edgeList &allEdges, const labelListList &pointEdges) const |
Return labels of patch edges in the global edge list using. More... | |
const Field< PointType > & | faceCentres () const |
Return face centres for patch. More... | |
const Field< PointType > & | faceAreas () const |
Return face areas for patch. More... | |
const Field< PointType > & | faceNormals () const |
Return face normals for patch. More... | |
const Field< PointType > & | pointNormals () const |
Return point normals for patch. More... | |
template<class ToPatch > | |
List< objectHit > | projectPoints (const ToPatch &targetPatch, const Field< PointType > &projectionDirection, const intersection::algorithm=intersection::algorithm::fullRay, const intersection::direction=intersection::direction::vector) const |
Project vertices of patch onto another patch. More... | |
template<class ToPatch > | |
List< objectHit > | projectFaceCentres (const ToPatch &targetPatch, const Field< PointType > &projectionDirection, const intersection::algorithm=intersection::algorithm::fullRay, const intersection::direction=intersection::direction::vector) const |
Project vertices of patch onto another patch. More... | |
const labelListList & | edgeLoops () const |
Return list of closed loops of boundary vertices. More... | |
surfaceTopo | surfaceType () const |
Calculate surface type formed by patch. More... | |
bool | checkTopology (const bool report=false, labelHashSet *setPtr=nullptr) const |
Check surface formed by patch for manifoldness (see above). More... | |
bool | checkPointManifold (const bool report=false, labelHashSet *setPtr=nullptr) const |
Checks primitivePatch for faces sharing point but not edge. More... | |
void | clearOut () |
void | clearGeom () |
void | clearTopology () |
void | clearPatchMeshAddr () |
virtual void | movePoints (const Field< PointType > &) |
Correct patch after moving points. More... | |
void | operator= (const PrimitivePatch< FaceList, PointField > &) |
Assignment operator. More... | |
void | operator= (PrimitivePatch< FaceList, PointField > &&) |
Move assignment operator. More... | |
template<class ToPatch > | |
Foam::List< Foam::objectHit > | projectPoints (const ToPatch &targetPatch, const Field< PointType > &projectionDirection, const intersection::algorithm alg, const intersection::direction dir) const |
template<class ToPatch > | |
Foam::List< Foam::objectHit > | projectFaceCentres (const ToPatch &targetPatch, const Field< PointType > &projectionDirection, const intersection::algorithm alg, const intersection::direction dir) const |
Public Member Functions inherited from surfaceFormatsCore | |
surfaceFormatsCore () | |
Construct null. More... | |
virtual | ~surfaceFormatsCore () |
Destructor. More... | |
Static Public Attributes | |
static const NamedEnum< filterType, 3 > | filterTypeNames_ |
Static Public Attributes inherited from surfaceFormatsCore | |
static word | nativeExt |
The file extension corresponding to 'native' surface format. More... | |
Additional Inherited Members | |
Static Public Member Functions inherited from MeshedSurface< face > | |
static bool | isTri () |
Face storage only handles triangulated faces. More... | |
static bool | canRead (const fileName &, const bool verbose=false) |
Can we read this file format? More... | |
static bool | canReadType (const word &ext, const bool verbose=false) |
Can we read this file format? More... | |
static bool | canWriteType (const word &ext, const bool verbose=false) |
Can we write this file format? More... | |
static wordHashSet | readTypes () |
static wordHashSet | writeTypes () |
static autoPtr< MeshedSurface > | New (const fileName &, const word &ext) |
Select constructed from filename (explicit extension) More... | |
static autoPtr< MeshedSurface > | New (const fileName &) |
Select constructed from filename (implicit extension) More... | |
static void | write (const fileName &, const MeshedSurface< face > &) |
Write to file. More... | |
Static Public Member Functions inherited from surfaceFormatsCore | |
static bool | checkSupport (const wordHashSet &available, const word &ext, const bool verbose, const word &functionName) |
static fileName | localMeshFileName (const word &surfName="") |
Return the local file name (within time directory) More... | |
static fileName | findMeshInstance (const Time &, const word &surfName="") |
Find instance with surfName. More... | |
static fileName | findMeshFile (const Time &, const word &surfName="") |
Find mesh file with surfName. More... | |
Protected Member Functions inherited from MeshedSurface< face > | |
void | transcribe (MeshedSurface< face > &) |
Transfer points/zones and transcribe face -> triFace. More... | |
void | transcribe (MeshedSurface< face > &surf) |
void | transcribe (MeshedSurface< face > &surf) |
void | checkZones () |
Basic sanity check on zones. More... | |
pointField & | storedPoints () |
Non-const access to global points. More... | |
List< face > & | storedFaces () |
Non-const access to the faces. More... | |
surfZoneList & | storedZones () |
Non-const access to the zones. More... | |
void | sortFacesAndStore (List< face > &&unsortedFaces, List< label > &&zoneIds, const bool sorted) |
Sort faces by zones and store sorted faces. More... | |
virtual void | remapFaces (const labelUList &faceMap) |
Set new zones from faceMap. More... | |
Static Protected Member Functions inherited from surfaceFormatsCore | |
template<class Container > | |
static List< surfZone > | oneZone (const Container &container, const word &name="zone0") |
Return a list with a single entry,. More... | |
static string | getLineNoComment (IFstream &) |
Read non-comment line. More... | |
Marching tet iso surface algorithm with optional filtering to keep only points originating from mesh edges.
Definition at line 57 of file isoSurface.H.
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strong |
Enumerator | |
---|---|
none | |
partial | |
full |
Definition at line 63 of file isoSurface.H.
isoSurface | ( | const polyMesh & | mesh, |
const scalarField & | cellValues, | ||
const scalarField & | pointValues, | ||
const scalar | iso, | ||
const filterType | filter | ||
) |
Construct from dictionary.
Definition at line 1158 of file isoSurface.C.
References Foam::DelaunayMeshTools::allPoints(), DynamicList< T, SizeInc, SizeMult, SizeDiv >::append(), Foam::e, PrimitivePatch<::Foam::List< Face >, pointField >::edgeFaces(), Foam::endl(), Foam::faceMap(), polyMesh::faces(), forAll, HashSet< Key, Hash >::insert(), Foam::interpolate(), tetMatcher::isA(), Foam::constant::atomic::mp, primitiveMesh::nCells(), primitiveMesh::nFaces(), primitiveMesh::nInternalFaces(), primitiveMesh::nPoints(), Foam::Pout, tmp< T >::ref(), MeshedSurface< Face >::reset(), Foam::returnReduce(), PackedBoolList::set(), List< T >::size(), and MeshedSurface< Face >::transfer().
Referenced by NamedEnum< compressibleField, 8 >::names().
TypeName | ( | "isoSurface" | ) |
Runtime type information.
|
inline |
For every face original cell in mesh.
Definition at line 236 of file isoSurface.H.
|
inline |
For every point originating face (pyramid) in mesh.
Definition at line 242 of file isoSurface.H.
|
inline |
Per point: originating mesh vertex/cc. See encoding above.
Definition at line 248 of file isoSurface.H.
References isoSurface::interpolate().
tmp<Field<Type> > interpolate | ( | const Field< Type > & | cCoords, |
const Field< Type > & | pCoords | ||
) | const |
Interpolates cCoords,pCoords.
Referenced by isoSurface::pointToVerts().
Foam::tmp<Foam::Field<Type> > interpolate | ( | const Field< Type > & | cellCoords, |
const Field< Type > & | pointCoords | ||
) | const |
Definition at line 31 of file isoSurfaceTemplates.C.
References fld(), forAll, Foam::mag(), tmp< T >::ref(), s(), and Foam::VSMALL.
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static |
Definition at line 73 of file isoSurface.H.
Referenced by NamedEnum< compressibleField, 8 >::names().