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ISAT.H
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23 
24 Class
25  Foam::chemistryTabulationMethods::ISAT
26 
27 Description
28  Implementation of the ISAT (In-situ adaptive tabulation), for chemistry
29  calculation.
30 
31  Reference:
32  \verbatim
33  Pope, S. B. (1997).
34  Computationally efficient implementation of combustion chemistry using
35  in situ adaptive tabulation.
36  Combustion Theory and Modelling, 1, 41-63.
37  \endverbatim
38 
39 \*---------------------------------------------------------------------------*/
40 
41 #ifndef ISAT_H
42 #define ISAT_H
43 
44 #include "binaryTree.H"
45 
46 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
47 
48 namespace Foam
49 {
50 namespace chemistryTabulationMethods
51 {
52 
53 /*---------------------------------------------------------------------------*\
54  Class ISAT Declaration
55 \*---------------------------------------------------------------------------*/
56 
57 template<class CompType, class ThermoType>
58 class ISAT
59 :
60  public chemistryTabulationMethod<CompType, ThermoType>
61 {
62  // Private Data
63 
64  //- List of the stored 'points' organized in a binary tree
66 
67  //- List of scale factors for species, temperature and pressure
68  scalarField scaleFactor_;
69 
70  const Time& runTime_;
71 
72  //- Lifetime (number of time steps) of a stored point
73  label chPMaxLifeTime_;
74 
75  //- Maximum number of growths before removing from the tree
76  label maxGrowth_;
77 
78  //- Check the binary tree for leafs to remove every interval
79  label checkEntireTreeInterval_;
80 
81  //- Factor that multiply the ideal depth of a binary tree to decide
82  // whether to try to balance of not
83  scalar maxDepthFactor_;
84 
85  //- Minimal size before trying to balance the tree
86  label minBalanceThreshold_;
87 
88  //- After a failed primary retrieve, look in the MRU list
89  Switch MRURetrieve_;
90 
91  //- Most Recently Used (MRU) list of chemPoint
93 
94  //- Maximum size of the MRU list
95  label maxMRUSize_;
96 
97  //- Store a pointer to the last chemPointISAT found
99 
100  //- Switch to allow growth (on by default)
101  Switch growPoints_;
102 
103  // Statistics on ISAT usage
104  label nRetrieved_;
105  label nGrowth_;
106  label nAdd_;
107 
108  autoPtr<OFstream> nRetrievedFile_;
109  autoPtr<OFstream> nGrowthFile_;
110  autoPtr<OFstream> nAddFile_;
111  autoPtr<OFstream> sizeFile_;
112 
113  bool cleaningRequired_;
114 
115  //- Number of equations in addition to the species eqs.
116  label nAdditionalEqns_;
117 
118 
119  // Private Member Functions
120 
121  //- Add a chemPoint to the MRU list
123 
124  //- Compute and return the mapping of the composition phiq
125  // Input : phi0 the nearest chemPoint used in the linear interpolation
126  // phiq the composition of the query point for which we want to
127  // compute the mapping
128  // Rphiq the mapping of the new composition point (given as empty)
129  // Output: void (the mapping is stored in the Rphiq array)
130  // Rphiq = Rphi0 + A * (phiq-phi0)
131  void calcNewC
132  (
134  const scalarField& phiq,
135  scalarField& Rphiq
136  );
137 
138  //- Check if the composition of the query point phiq lies in the
139  // ellipsoid of accuracy approximating the region of accuracy of the
140  // stored chemPoint phi0
141  // Input : phi0 the nearest chemPoint used in the linear interpolation
142  // phiq the composition of the query point for which we want to
143  // compute the mapping
144  // Output: true if phiq is in the EOA, false if not
145  bool grow
146  (
148  const scalarField& phiq,
149  const scalarField& Rphiq
150  );
151 
152  //- Clean and balance the tree
153  bool cleanAndBalance();
154 
155  //- Functions to construct the gradients matrix
156  // When mechanism reduction is active, the A matrix is given by
157  // Aaa Aad
158  // A = ( Ada Add ), where the sub gradient matrices are:
159  // (Aaa) active species according to active species, (Aad) active
160  // species according to disabled species, (Ada) disabled species
161  // according to active species, and (Add) disabled species according to
162  // disabled species.
163  // The current implementation computes Aaa with the Jacobian of the
164  // reduced set of species. Aad = 0, Ada = 0, and Add = I.
165  // To be implemented: add options to compute the A matrix for different
166  // strategies
167  void computeA
168  (
170  const scalarField& Rphiq,
171  const label li,
172  const scalar rho,
173  const scalar dt
174  );
175 
176 
177 public:
178 
179  //- Runtime type information
180  TypeName("ISAT");
181 
182 
183  // Constructors
184 
185  //- Construct from dictionary
186  ISAT
187  (
188  const dictionary& chemistryProperties,
190  );
191 
192  //- Disallow default bitwise copy construction
193  ISAT(const ISAT&) = delete;
194 
195 
196  // Destructor
197  virtual ~ISAT();
198 
199 
200  // Member Functions
203  {
204  return chemisTree_;
205  }
207  inline const scalarField& scaleFactor() const
208  {
209  return scaleFactor_;
210  }
211 
212  //- Return the size of the binary tree
213  virtual inline label size()
214  {
215  return chemisTree_.size();
216  }
217 
218  virtual void writePerformance();
219 
220  //- Find the closest stored leaf of phiQ and store the result in
221  // RphiQ or return false.
222  virtual bool retrieve
223  (
224  const Foam::scalarField& phiq,
225  scalarField& Rphiq
226  );
227 
228  //- Add information to the tabulation.
229  // This function can grow an existing point or add a new leaf to the
230  // binary tree Input : phiq the new composition to store Rphiq the
231  // mapping of the new composition point
232  virtual label add
233  (
234  const scalarField& phiq,
235  const scalarField& Rphiq,
236  const label li,
237  const scalar rho,
238  const scalar deltaT
239  );
241  virtual bool update()
242  {
243  return cleanAndBalance();
244  }
245 };
246 
247 
248 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
249 
250 } // End namespace chemistryTabulationMethods
251 } // End namespace Foam
252 
253 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
254 
255 #ifdef NoRepository
256  #include "ISAT.C"
257 #endif
258 
259 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
260 
261 #endif
262 
263 // ************************************************************************* //
intWM_LABEL_SIZE_t label
A label is an int32_t or int64_t as specified by the pre-processor macro WM_LABEL_SIZE.
Definition: label.H:59
A list of keyword definitions, which are a keyword followed by any number of values (e...
Definition: dictionary.H:158
Template class for non-intrusive linked lists.
Definition: LList.H:51
Leaf of the binary tree. The chemPoint stores the composition &#39;phi&#39;, the mapping of this composition ...
ISAT(const dictionary &chemistryProperties, TDACChemistryModel< CompType, ThermoType > &chemistry)
Construct from dictionary.
Definition: ISAT.C:33
A simple wrapper around bool so that it can be read as a word: true/false, on/off, yes/no, y/n, t/f, or none/any.
Definition: Switch.H:60
BasicChemistryModel< rhoReactionThermo > & chemistry
Class to control time during OpenFOAM simulations that is also the top-level objectRegistry.
Definition: Time.H:68
binaryTree< CompType, ThermoType > & chemisTree()
Definition: ISAT.H:201
virtual bool retrieve(const Foam::scalarField &phiq, scalarField &Rphiq)
Find the closest stored leaf of phiQ and store the result in.
Definition: ISAT.C:453
Data storage of the chemistryOnLineLibrary according to a binary tree structure.
Definition: binaryTree.H:57
virtual label add(const scalarField &phiq, const scalarField &Rphiq, const label li, const scalar rho, const scalar deltaT)
Add information to the tabulation.
Definition: ISAT.C:534
const dimensionedScalar & phi0
Magnetic flux quantum: default SI units: [Wb].
TypeName("ISAT")
Runtime type information.
label size()
Member functions.
Definition: binaryTree.H:134
An abstract class for chemistry tabulation.
virtual label size()
Return the size of the binary tree.
Definition: ISAT.H:212
Implementation of the ISAT (In-situ adaptive tabulation), for chemistry calculation.
Definition: ISAT.H:57
An auto-pointer similar to the STL auto_ptr but with automatic casting to a reference to the type and...
Definition: PtrList.H:52
const scalarField & scaleFactor() const
Definition: ISAT.H:206
Namespace for OpenFOAM.