subsetMesh.C

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/*---------------------------------------------------------------------------*\
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    \\  /    A nd           | Copyright (C) 2011-2018 OpenFOAM Foundation
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.

    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.

    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.

Application
    subsetMesh

Description
    Selects a section of mesh based on a cellSet.

    The utility sub-sets the mesh to choose only a part of interest. Check
    the setSet/cellSet/topoSet utilities to see how to select cells based on
    various shapes.

    The mesh will subset all points, faces and cells needed to make a sub-mesh
    but will not preserve attached boundary types.

\*---------------------------------------------------------------------------*/

#include "fvMeshSubset.H"
#include "argList.H"
#include "cellSet.H"
#include "IOobjectList.H"
#include "volFields.H"

using namespace Foam;

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //


template<class Type>
void subsetVolFields
(
    const fvMeshSubset& subsetter,
    const wordList& fieldNames,
    PtrList<GeometricField<Type, fvPatchField, volMesh>>& subFields
)
{
    const fvMesh& baseMesh = subsetter.baseMesh();

    forAll(fieldNames, i)
    {
        const word& fieldName = fieldNames[i];

        Info<< "Subsetting field " << fieldName << endl;

        GeometricField<Type, fvPatchField, volMesh> fld
        (
            IOobject
            (
                fieldName,
                baseMesh.time().timeName(),
                baseMesh,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            baseMesh
        );

        subFields.set(i, subsetter.interpolate(fld));
    }
}


template<class Type>
void subsetSurfaceFields
(
    const fvMeshSubset& subsetter,
    const wordList& fieldNames,
    PtrList<GeometricField<Type, fvsPatchField, surfaceMesh>>& subFields
)
{
    const fvMesh& baseMesh = subsetter.baseMesh();

    forAll(fieldNames, i)
    {
        const word& fieldName = fieldNames[i];

        Info<< "Subsetting field " << fieldName << endl;

        GeometricField<Type, fvsPatchField, surfaceMesh> fld
        (
            IOobject
            (
                fieldName,
                baseMesh.time().timeName(),
                baseMesh,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            baseMesh
        );

        subFields.set(i, subsetter.interpolate(fld));
    }
}


template<class Type>
void subsetPointFields
(
    const fvMeshSubset& subsetter,
    const pointMesh& pMesh,
    const wordList& fieldNames,
    PtrList<GeometricField<Type, pointPatchField, pointMesh>>& subFields
)
{
    const fvMesh& baseMesh = subsetter.baseMesh();

    forAll(fieldNames, i)
    {
        const word& fieldName = fieldNames[i];

        Info<< "Subsetting field " << fieldName << endl;

        GeometricField<Type, pointPatchField, pointMesh> fld
        (
            IOobject
            (
                fieldName,
                baseMesh.time().timeName(),
                baseMesh,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            pMesh
        );

        subFields.set(i, subsetter.interpolate(fld));
    }
}


template<class Type>
void subsetDimensionedFields
(
    const fvMeshSubset& subsetter,
    const wordList& fieldNames,
    PtrList<DimensionedField<Type, volMesh>>& subFields
)
{
    const fvMesh& baseMesh = subsetter.baseMesh();

    forAll(fieldNames, i)
    {
        const word& fieldName = fieldNames[i];

        Info<< "Subsetting field " << fieldName << endl;

        DimensionedField<Type, volMesh> fld
        (
            IOobject
            (
                fieldName,
                baseMesh.time().timeName(),
                baseMesh,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            ),
            baseMesh
        );

        subFields.set(i, subsetter.interpolate(fld));
    }
}



int main(int argc, char *argv[])
{
    argList::addNote
    (
        "select a mesh subset based on a cellSet"
    );

    #include "addOverwriteOption.H"
    #include "addRegionOption.H"
    argList::validArgs.append("cellSet");
    argList::addOption
    (
        "patch",
        "name",
        "add exposed internal faces to specified patch instead of to "
        "'oldInternalFaces'"
    );
    argList::addOption
    (
        "resultTime",
        "time",
        "specify a time for the resulting mesh"
    );
    argList::addBoolOption
    (
        "noFields",
        "do not update fields"
    );

    #include "setRootCase.H"
    #include "createTime.H"
    runTime.functionObjects().off();

    Foam::word meshRegionName = polyMesh::defaultRegion;
    args.optionReadIfPresent("region", meshRegionName);

    #include "createNamedMesh.H"


    const word setName = args[1];

    word meshInstance = mesh.pointsInstance();
    word fieldsInstance = runTime.timeName();

    const bool overwrite = args.optionFound("overwrite");
    const bool specifiedInstance = args.optionReadIfPresent
    (
        "resultTime",
        fieldsInstance
    );
    if (specifiedInstance)
    {
        // Set both mesh and field to this time
        meshInstance = fieldsInstance;
    }
    const bool fields = !args.optionFound("noFields");


    Info<< "Reading cell set from " << setName << endl << endl;

    // Create mesh subsetting engine
    fvMeshSubset subsetter(mesh);

    label patchi = -1;

    if (args.optionFound("patch"))
    {
        const word patchName = args["patch"];

        patchi = mesh.boundaryMesh().findPatchID(patchName);

        if (patchi == -1)
        {
            FatalErrorInFunction
                << nl << "Valid patches are " << mesh.boundaryMesh().names()
                << exit(FatalError);
        }

        Info<< "Adding exposed internal faces to patch " << patchName << endl
            << endl;
    }
    else
    {
        Info<< "Adding exposed internal faces to a patch called"
            << " \"oldInternalFaces\" (created if necessary)" << endl
            << endl;
    }


    cellSet currentSet(mesh, setName);
    subsetter.setLargeCellSubset(currentSet, patchi, true);


    if (fields)
    {
        IOobjectList objects(mesh, runTime.timeName());

        // Read vol fields and subset
        // ~~~~~~~~~~~~~~~~~~~~~~~~~~

        wordList scalarNames(objects.names(volScalarField::typeName));
        PtrList<volScalarField> scalarFlds(scalarNames.size());
        subsetVolFields(subsetter, scalarNames, scalarFlds);

        wordList vectorNames(objects.names(volVectorField::typeName));
        PtrList<volVectorField> vectorFlds(vectorNames.size());
        subsetVolFields(subsetter, vectorNames, vectorFlds);

        wordList sphericalTensorNames
        (
            objects.names(volSphericalTensorField::typeName)
        );
        PtrList<volSphericalTensorField> sphericalTensorFlds
        (
            sphericalTensorNames.size()
        );
        subsetVolFields(subsetter, sphericalTensorNames, sphericalTensorFlds);

        wordList symmTensorNames(objects.names(volSymmTensorField::typeName));
        PtrList<volSymmTensorField> symmTensorFlds(symmTensorNames.size());
        subsetVolFields(subsetter, symmTensorNames, symmTensorFlds);

        wordList tensorNames(objects.names(volTensorField::typeName));
        PtrList<volTensorField> tensorFlds(tensorNames.size());
        subsetVolFields(subsetter, tensorNames, tensorFlds);


        // Read surface fields and subset
        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

        wordList surfScalarNames(objects.names(surfaceScalarField::typeName));
        PtrList<surfaceScalarField> surfScalarFlds(surfScalarNames.size());
        subsetSurfaceFields(subsetter, surfScalarNames, surfScalarFlds);

        wordList surfVectorNames(objects.names(surfaceVectorField::typeName));
        PtrList<surfaceVectorField> surfVectorFlds(surfVectorNames.size());
        subsetSurfaceFields(subsetter, surfVectorNames, surfVectorFlds);

        wordList surfSphericalTensorNames
        (
            objects.names(surfaceSphericalTensorField::typeName)
        );
        PtrList<surfaceSphericalTensorField> surfSphericalTensorFlds
        (
            surfSphericalTensorNames.size()
        );
        subsetSurfaceFields
        (
            subsetter,
            surfSphericalTensorNames,
            surfSphericalTensorFlds
        );

        wordList surfSymmTensorNames
        (
            objects.names(surfaceSymmTensorField::typeName)
        );
        PtrList<surfaceSymmTensorField> surfSymmTensorFlds
        (
            surfSymmTensorNames.size()
        );
        subsetSurfaceFields(subsetter, surfSymmTensorNames, surfSymmTensorFlds);

        wordList surfTensorNames(objects.names(surfaceTensorField::typeName));
        PtrList<surfaceTensorField> surfTensorFlds(surfTensorNames.size());
        subsetSurfaceFields(subsetter, surfTensorNames, surfTensorFlds);


        // Read point fields and subset
        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~

        const pointMesh& pMesh = pointMesh::New(mesh);

        wordList pointScalarNames(objects.names(pointScalarField::typeName));
        PtrList<pointScalarField> pointScalarFlds(pointScalarNames.size());
        subsetPointFields(subsetter, pMesh, pointScalarNames, pointScalarFlds);

        wordList pointVectorNames(objects.names(pointVectorField::typeName));
        PtrList<pointVectorField> pointVectorFlds(pointVectorNames.size());
        subsetPointFields(subsetter, pMesh, pointVectorNames, pointVectorFlds);

        wordList pointSphericalTensorNames
        (
            objects.names(pointSphericalTensorField::typeName)
        );
        PtrList<pointSphericalTensorField> pointSphericalTensorFlds
        (
            pointSphericalTensorNames.size()
        );
        subsetPointFields
        (
            subsetter,
            pMesh,
            pointSphericalTensorNames,
            pointSphericalTensorFlds
        );

        wordList pointSymmTensorNames
        (
            objects.names(pointSymmTensorField::typeName)
        );
        PtrList<pointSymmTensorField> pointSymmTensorFlds
        (
            pointSymmTensorNames.size()
        );
        subsetPointFields
        (
            subsetter,
            pMesh,
            pointSymmTensorNames,
            pointSymmTensorFlds
        );

        wordList pointTensorNames(objects.names(pointTensorField::typeName));
        PtrList<pointTensorField> pointTensorFlds(pointTensorNames.size());
        subsetPointFields(subsetter, pMesh, pointTensorNames, pointTensorFlds);


        // Read dimensioned fields and subset
        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

        typedef volScalarField::Internal dimScalType;
        wordList scalarDimNames(objects.names(dimScalType::typeName));
        PtrList<dimScalType> scalarDimFlds(scalarDimNames.size());
        subsetDimensionedFields(subsetter, scalarDimNames, scalarDimFlds);

        typedef volVectorField::Internal dimVecType;
        wordList vectorDimNames(objects.names(dimVecType::typeName));
        PtrList<dimVecType> vectorDimFlds(vectorDimNames.size());
        subsetDimensionedFields(subsetter, vectorDimNames, vectorDimFlds);

        typedef volSphericalTensorField::Internal dimSphereType;
        wordList sphericalTensorDimNames
        (
            objects.names(dimSphereType::typeName)
        );
        PtrList<dimSphereType> sphericalTensorDimFlds
        (
            sphericalTensorDimNames.size()
        );
        subsetDimensionedFields
        (
            subsetter,
            sphericalTensorDimNames,
            sphericalTensorDimFlds
        );

        typedef volSymmTensorField::Internal dimSymmTensorType;
        wordList symmTensorDimNames(objects.names(dimSymmTensorType::typeName));
        PtrList<dimSymmTensorType> symmTensorDimFlds(symmTensorDimNames.size());
        subsetDimensionedFields
        (
            subsetter,
            symmTensorDimNames,
            symmTensorDimFlds
        );

        typedef volTensorField::Internal dimTensorType;
        wordList tensorDimNames(objects.names(dimTensorType::typeName));
        PtrList<dimTensorType> tensorDimFlds(tensorDimNames.size());
        subsetDimensionedFields(subsetter, tensorDimNames, tensorDimFlds);


        // Write mesh and fields to new time
        // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

        if (overwrite || specifiedInstance)
        {
            runTime.setTime(instant(fieldsInstance), 0);
            subsetter.subMesh().setInstance(meshInstance);
        }
        else
        {
            runTime++;
        }

        Info<< "Writing subsetted mesh and fields to time "
            << runTime.timeName() << endl;

        subsetter.subMesh().write();

        // Subsetting adds 'subset' prefix. Rename field to be like original.
        forAll(scalarFlds, i)
        {
            scalarFlds[i].rename(scalarNames[i]);
            scalarFlds[i].write();
        }
        forAll(vectorFlds, i)
        {
            vectorFlds[i].rename(vectorNames[i]);
            vectorFlds[i].write();
        }
        forAll(sphericalTensorFlds, i)
        {
            sphericalTensorFlds[i].rename(sphericalTensorNames[i]);
            sphericalTensorFlds[i].write();
        }
        forAll(symmTensorFlds, i)
        {
            symmTensorFlds[i].rename(symmTensorNames[i]);
            symmTensorFlds[i].write();
        }
        forAll(tensorFlds, i)
        {
            tensorFlds[i].rename(tensorNames[i]);
            tensorFlds[i].write();
        }

        // Surface ones.
        forAll(surfScalarFlds, i)
        {
            surfScalarFlds[i].rename(surfScalarNames[i]);
            surfScalarFlds[i].write();
        }
        forAll(surfVectorFlds, i)
        {
            surfVectorFlds[i].rename(surfVectorNames[i]);
            surfVectorFlds[i].write();
        }
        forAll(surfSphericalTensorFlds, i)
        {
            surfSphericalTensorFlds[i].rename(surfSphericalTensorNames[i]);
            surfSphericalTensorFlds[i].write();
        }
        forAll(surfSymmTensorFlds, i)
        {
            surfSymmTensorFlds[i].rename(surfSymmTensorNames[i]);
            surfSymmTensorFlds[i].write();
        }
        forAll(surfTensorNames, i)
        {
            surfTensorFlds[i].rename(surfTensorNames[i]);
            surfTensorFlds[i].write();
        }

        // Point ones
        forAll(pointScalarFlds, i)
        {
            pointScalarFlds[i].rename(pointScalarNames[i]);
            pointScalarFlds[i].write();
        }
        forAll(pointVectorFlds, i)
        {
            pointVectorFlds[i].rename(pointVectorNames[i]);
            pointVectorFlds[i].write();
        }
        forAll(pointSphericalTensorFlds, i)
        {
            pointSphericalTensorFlds[i].rename(pointSphericalTensorNames[i]);
            pointSphericalTensorFlds[i].write();
        }
        forAll(pointSymmTensorFlds, i)
        {
            pointSymmTensorFlds[i].rename(pointSymmTensorNames[i]);
            pointSymmTensorFlds[i].write();
        }
        forAll(pointTensorNames, i)
        {
            pointTensorFlds[i].rename(pointTensorNames[i]);
            pointTensorFlds[i].write();
        }

        // DimensionedFields
        forAll(scalarDimFlds, i)
        {
            scalarDimFlds[i].rename(scalarDimNames[i]);
            scalarDimFlds[i].write();
        }
        forAll(vectorDimFlds, i)
        {
            vectorDimFlds[i].rename(vectorDimNames[i]);
            vectorDimFlds[i].write();
        }
        forAll(sphericalTensorDimFlds, i)
        {
            sphericalTensorDimFlds[i].rename(sphericalTensorDimNames[i]);
            sphericalTensorDimFlds[i].write();
        }
        forAll(symmTensorDimFlds, i)
        {
            symmTensorDimFlds[i].rename(symmTensorDimNames[i]);
            symmTensorDimFlds[i].write();
        }
        forAll(tensorDimFlds, i)
        {
            tensorDimFlds[i].rename(tensorDimNames[i]);
            tensorDimFlds[i].write();
        }
    }
    else
    {
        // Write mesh to new time
        // ~~~~~~~~~~~~~~~~~~~~~~

        if (overwrite || specifiedInstance)
        {
            runTime.setTime(instant(fieldsInstance), 0);
            subsetter.subMesh().setInstance(meshInstance);
        }
        else
        {
            runTime++;
        }

        Info<< "Writing subsetted mesh to time "
            << runTime.timeName() << endl;

        subsetter.subMesh().write();
    }

    Info<< "End\n" << endl;

    return 0;
}


// ************************************************************************* //