Public Member Functions | Static Public Member Functions | Friends | List of all members
MichaelisMentenReactionRate Class Reference

Michaelis-Menten reaction rate for enzymatic reactions. More...

Public Member Functions

 MichaelisMentenReactionRate (const speciesTable &species, const dictionary &dict)
 Construct from dictionary. More...
 
void preEvaluate () const
 Pre-evaluation hook. More...
 
void postEvaluate () const
 Post-evaluation hook. More...
 
scalar operator() (const scalar p, const scalar T, const scalarField &c, const label li) const
 Return the rate. More...
 
scalar ddT (const scalar p, const scalar T, const scalarField &c, const label li) const
 The derivative of the rate w.r.t. temperature. More...
 
bool hasDdc () const
 Is the rate a function of concentration? More...
 
void ddc (const scalar p, const scalar T, const scalarField &c, const label li, scalarField &ddc) const
 The derivative of the rate w.r.t. concentration. More...
 
void write (Ostream &os) const
 Write to stream. More...
 

Static Public Member Functions

static word type ()
 Return the type name. More...
 

Friends

Ostream & operator<< (Ostream &, const MichaelisMentenReactionRate &)
 

Detailed Description

Michaelis-Menten reaction rate for enzymatic reactions.

Reference: 

    Michaelis, L., & Menten, M. L. (1913).
    Die Kinetik der InwertinWirkung.
    Biochem., (49), 333-369.
Source files

Definition at line 62 of file MichaelisMentenReactionRate.H.

Constructor & Destructor Documentation

◆ MichaelisMentenReactionRate()

MichaelisMentenReactionRate ( const speciesTable &  species,
const dictionary &  dict 
)
inline

Construct from dictionary.

Definition at line 29 of file MichaelisMentenReactionRateI.H.

Member Function Documentation

◆ type()

static word type ( )
inlinestatic

Return the type name.

Definition at line 95 of file MichaelisMentenReactionRate.H.

References Foam::constant::universal::c, MichaelisMentenReactionRate::ddc(), MichaelisMentenReactionRate::ddT(), MichaelisMentenReactionRate::hasDdc(), p, MichaelisMentenReactionRate::postEvaluate(), MichaelisMentenReactionRate::preEvaluate(), Foam::T(), and MichaelisMentenReactionRate::write().

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◆ preEvaluate()

void preEvaluate ( ) const
inline

Pre-evaluation hook.

Definition at line 43 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::type().

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◆ postEvaluate()

void postEvaluate ( ) const
inline

Post-evaluation hook.

Definition at line 47 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::type().

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◆ operator()()

Foam::scalar operator() ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li 
) const
inline

Return the rate.

Definition at line 52 of file MichaelisMentenReactionRateI.H.

References MichaelisMentenReactionRate::ddT().

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◆ ddT()

Foam::scalar ddT ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li 
) const
inline

The derivative of the rate w.r.t. temperature.

Definition at line 64 of file MichaelisMentenReactionRateI.H.

Referenced by MichaelisMentenReactionRate::operator()(), and MichaelisMentenReactionRate::type().

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◆ hasDdc()

bool hasDdc ( ) const
inline

Is the rate a function of concentration?

Definition at line 75 of file MichaelisMentenReactionRateI.H.

References MichaelisMentenReactionRate::ddc().

Referenced by MichaelisMentenReactionRate::type().

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◆ ddc()

void ddc ( const scalar  p,
const scalar  T,
const scalarField &  c,
const label  li,
scalarField &  ddc 
) const
inline

The derivative of the rate w.r.t. concentration.

Definition at line 82 of file MichaelisMentenReactionRateI.H.

References Foam::sqr().

Referenced by MichaelisMentenReactionRate::hasDdc(), and MichaelisMentenReactionRate::type().

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◆ write()

void write ( Ostream &  os) const
inline

Write to stream.

Definition at line 95 of file MichaelisMentenReactionRateI.H.

References Foam::writeEntry().

Referenced by MichaelisMentenReactionRate::type().

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Friends And Related Function Documentation

◆ operator<<

Ostream& operator<< ( Ostream &  ,
const MichaelisMentenReactionRate &   
)
friend
The documentation for this class was generated from the following files: