scotchDecomp.H

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Class
    Foam::scotchDecomp
 
Description
    Scotch domain decomposition.
    When run in parallel will collect the whole graph on to the master,
    decompose and send back. Use ptscotchDecomp for proper distributed
    decomposition.
 
    Quoting from the Scotch forum, on the 2008-08-22 10:09, Francois
    PELLEGRINI posted the following details:
    \verbatim
    RE: Graph mapping 'strategy' string
 
    Strategy handling in Scotch is a bit tricky. In order
    not to be confused, you must have a clear view of how they are built.
    Here are some rules:
 
    1- Strategies are made up of "methods" which are combined by means of
    "operators".
 
    2- A method is of the form "m{param=value,param=value,...}", where "m"
    is a single character (this is your first error: "f" is a method name,
    not a parameter name).
 
    3- There exist different sort of strategies : bipartitioning strategies,
    mapping strategies, ordering strategies, which cannot be mixed. For
    instance, you cannot build a bipartitioning strategy and feed it to a
    mapping method (this is your second error).
 
    To use the "mapCompute" routine, you must create a mapping strategy, not
    a bipartitioning one, and so use stratGraphMap() and not
    stratGraphBipart(). Your mapping strategy should however be based on the
    "recursive bipartitioning" method ("b"). For instance, a simple (and
    hence not very efficient) mapping strategy can be :
 
    "b{sep=f}"
 
    which computes mappings with the recursive bipartitioning method "b",
    this latter using the Fiduccia-Mattheyses method "f" to compute its
    separators.
 
    If you want an exact partition (see your previous post), try
    "b{sep=fx}".
 
    However, these strategies are not the most efficient, as they do not
    make use of the multi-level framework.
 
    To use the multi-level framework, try for instance:
 
    "b{sep=m{vert=100,low=h,asc=f}x}"
 
    The current default mapping strategy in Scotch can be seen by using the
    "-vs" option of program gmap. It is, to date:
 
    r
    {
        job=t,
        map=t,
        poli=S,
        sep=
        (
            m
            {
                asc=b
                {
                    bnd=
                    (
                        d{pass=40,dif=1,rem=1}
                     |
                    )
                    f{move=80,pass=-1,bal=0.002491},
                    org=f{move=80,pass=-1,bal=0.002491},
                    width=3
                },
                low=h{pass=10}
                f{move=80,pass=-1,bal=0.002491},
                type=h,
                vert=80,
                rat=0.8
            }
          | m
            {
                asc=b
                {
                    bnd=
                    (
                        d{pass=40,dif=1,rem=1}
                      |
                    )
                    f{move=80,pass=-1,bal=0.002491},
                    org=f{move=80,pass=-1,bal=0.002491},
                    width=3
                },
                low=h{pass=10}
                f{move=80,pass=-1,bal=0.002491},
                type=h,
                vert=80,
                rat=0.8
            }
        )
    }
    \endverbatim
 
    Given that this information was written in 2008, this example strategy will
    unlikely work as-is with the more recent Scotch versions. Therefore, the
    steps for getting the current default strategy from within Scotch, is to do
    the following steps:
 
    <ol>
    <li> Edit the file <tt>system/decomposeParDict</tt> and use the following
    settings:
 
    \verbatim
    method          scotch;
 
    scotchCoeffs
    {
        writeGraph true;
    }
    \endverbatim
    </li>
 
    <li> Run \c decomposePar. For example, it will write a file named
         <tt>region0.grf</tt>.
    </li>
 
    <li> Now, instead of using \c gmap, run \c gpart with the following
    command structure to get the default strategy:
 
    \verbatim
    gpart <nProcs> -vs <grfFile>
    \endverbatim
 
    where:
 
    <ul>
        <li> <grfFile> is the file that was obtained with the option
             <tt>writeGraph=true</tt>, namely <tt>region0.grf</tt>.
        </li>
        <li> <nProcs> is the \c numberOfSubdomains defined in the dictionary
             file.
        </li>
    </ul>
    </li>
 
    <li> At the end of the execution will be shown a long string, similar to
    the following example (complete line was cropped at <tt>[...]</tt>):
 
    \verbatim
    S    Strat=m{asc=b{width=3,bnd=d{pass=40,dif=1,rem=0}[...],type=h}
    \endverbatim
    </li>
 
    <li> Edit the file <tt>system/decomposeParDict</tt> once again and add
    the \c strategy entry as exemplified:
 
    \verbatim
    method          scotch;
 
    scotchCoeffs
    {
        // writeGraph true;
        strategy "m{asc=b{width=3,bnd=d{pass=40,dif=1,rem=0}[...],type=h}";
    }
    \endverbatim
    </li>
 
    <li> Finally, run \c decomposePar once again, to at least test if it
         works as intended.
    </li>
 
    </ol>
 
    Note:
        \c gpart can be found in the current search path by adding the
        respective \c bin folder from the Scotch installation, namely by running
        the following commands:
        \verbatim
            source $(foamEtcFile config.sh/scotch)
            export PATH=$PATH:$SCOTCH_ARCH_PATH/bin
        \endverbatim
 
SourceFiles
    scotchDecomp.C
 
\*---------------------------------------------------------------------------*/
 
#ifndef scotchDecomp_H
#define scotchDecomp_H
 
#include "decompositionMethod.H"
 
namespace Foam
{
 
/*---------------------------------------------------------------------------*\
                        Class scotchDecomp Declaration
\*---------------------------------------------------------------------------*/
 
class scotchDecomp
:
    public decompositionMethod
{
    // Private Member Functions
 
        //- Check and print error message
        static void check(const int, const char*);
 
        label decompose
        (
            const fileName& meshPath,
            const List<label>& adjncy,
            const List<label>& xadj,
            const scalarField& cWeights,
            List<label>& finalDecomp
        );
 
        //- Decompose non-parallel
        label decomposeOneProc
        (
            const fileName& meshPath,
            const List<label>& adjncy,
            const List<label>& xadj,
            const scalarField& cWeights,
            List<label>& finalDecomp
        );
 
 
public:
 
    //- Runtime type information
    TypeName("scotch");
 
 
    // Constructors
 
        //- Construct given the decomposition dictionary and mesh
        scotchDecomp(const dictionary& decompositionDict);
 
        //- Disallow default bitwise copy construction
        scotchDecomp(const scotchDecomp&) = delete;
 
 
    //- Destructor
    virtual ~scotchDecomp()
    {}
 
 
    // Member Functions
 
        //- Inherit decompose from decompositionMethod
        using decompositionMethod::decompose;
 
        //- Return for every coordinate the wanted processor number. Use the
        //  mesh connectivity (if needed)
        //  Weights get normalised with minimum weight and truncated to
        //  convert into integer so e.g. 3.5 is seen as 3. The overall sum
        //  of weights might otherwise overflow.
        virtual labelList decompose
        (
            const polyMesh& mesh,
            const pointField& points,
            const scalarField& pointWeights
        );
 
        //- Return for every coordinate the wanted processor number. Gets
        //  passed agglomeration map (from fine to coarse cells) and coarse cell
        //  location. Can be overridden by decomposers that provide this
        //  functionality natively.
        //  See note on weights above.
        virtual labelList decompose
        (
            const polyMesh& mesh,
            const labelList& agglom,
            const pointField& regionPoints,
            const scalarField& regionWeights
        );
 
        //- Return for every coordinate the wanted processor number. Explicitly
        //  provided mesh connectivity.
        //  The connectivity is equal to mesh.cellCells() except for
        //  - in parallel the cell numbers are global cell numbers (starting
        //    from 0 at processor0 and then incrementing all through the
        //    processors)
        //  - the connections are across coupled patches
        //  See note on weights above.
        virtual labelList decompose
        (
            const labelListList& globalCellCells,
            const pointField& cc,
            const scalarField& cWeights
        );
 
 
    // Member Operators
 
        //- Disallow default bitwise assignment
        void operator=(const scotchDecomp&) = delete;
};
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
} // End namespace Foam
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
#endif
 
// ************************************************************************* //